HEALTH BANK - A Workbench for Data Science Applications in Healthcare

Abstract

The enormous amounts of data that are generated in the healthcare process and stored in electronic health record (EHR) systems are an underutilized resource that, with the use of data science applications, can be exploited to improve healthcare. To foster the development and use of data science applications in healthcare, there is a fundamental need for access to EHR data, which is typically not readily available to researchers and developers. A relatively rare exception is the large EHR database, the Stockholm EPR Corpus, comprising data from more than two million patients, that has been been made available to a limited group of researchers at Stockholm University. Here, we describe a number of data science applications that have been developed using this database, demonstrating the potential reuse of EHR data to support healthcare and public health activities, as well as facilitate medical research. However, in order to realize the full potential of this resource, it needs to be made available to a larger community of researchers, as well as to industry actors. To that end, we envision the provision of an infrastructure around this database called HEALTH BANK - the Swedish Health Record Research Bank. It will function both as a workbench for the development of data science applications and as a data exploration tool, allowing epidemiologists, pharmacologists and other medical researchers to generate and evaluate hypotheses. Aggregated data will be fed into a pipeline for open e-access, while non-aggregated data will be provided to researchers within an ethical permission framework. We believe that HEALTH BANK has the potential to promote a growing industry around the development of data science applications that will ultimately increase the efficiency and effectiveness of healthcare. Copyright © 2015 held by the authors. Copyright © 2015 for the individual papers by the papers' authors.

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