Synthesize high-dimensional longitudinal electronic health records via hierarchical autoregressive language model

Abstract

Abstract Synthetic electronic health records (EHRs) that are both realistic and privacy-preserving offer alternatives to real EHRs for machine learning (ML) and statistical analysis. However, generating high-fidelity EHR data in its original, high-dimensional form poses challenges for existing methods. We propose Hierarchical Autoregressive Language mOdel () for generating longitudinal, high-dimensional EHR, which preserve the statistical properties of real EHRs and can train accurate ML models without privacy concerns. generates a probability density function over medical codes, clinical visits, and patient records, allowing for generating realistic EHR data without requiring variable selection or aggregation. Extensive experiments demonstrated that can generate high-fidelity data with high-dimensional disease code probabilities closely mirroring (above 0.9 R 2 correlation) real EHR data. also enhances the accuracy of predictive modeling and enables downstream ML models to attain similar accuracy as models trained on genuine data.

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